hub IGV
shortLabel Tutorials
longLabel Tutorials
useOneFile on

genome hg19

track uiBasics
shortLabel UI Basics
compositeTrack on
defaultIsClosed 0

    track GM12878_H3K27ac
    type bigWig
    shortLabel GM12878 H3K27ac
    color 255,0,0
    viewLimits 0:25
    bigDataUrl https://www.encodeproject.org/files/ENCFF000ASJ/@@download/ENCFF000ASJ.bigWig
    parent uiBasics

    track GM12878_H3K27me3
    type bigWig
    shortLabel GM12878 H3K27me3
    color 255,0,0
    viewLimits 0:25
    bigDataUrl https://www.encodeproject.org/files/ENCFF000AST/@@download/ENCFF000AST.bigWig
    parent uiBasics

    track GM12878_H3K36me3
    type bigWig
    shortLabel GM12878 H3K36me3
    color 0,0,150
    viewLimits 0:25
    bigDataUrl https://www.encodeproject.org/files/ENCFF000ATA/@@download/ENCFF000ATA.bigWig
    parent uiBasics

    track GM12878_H3K4me1
    type bigWig
    shortLabel GM12878 H3K4me1
    color 0,150,0
    viewLimits 0:25
    bigDataUrl https://www.encodeproject.org/files/ENCFF000ARZ/@@download/ENCFF000ARZ.bigWig
    parent uiBasics

track bodyMap
shortLabel RNA-Seq (Body Map)
compositeTrack on
defaultIsClosed 0

    track heart
    shortLabel Heart
    type bam
    bigDataUrl https://raw.githubusercontent.com/igvteam/igv-data/refs/heads/main/data/tutorials/rna/heart_slc25a3.bam
    parent bodyMap

    track liver
    shortLabel Liver
    type bam
    bigDataUrl https://raw.githubusercontent.com/igvteam/igv-data/refs/heads/main/data/tutorials/rna/liver_slc25a3.bam
    parent bodyMap

track variants
shortLabel VCF Variants
longLabel VCF Variants from 1000 Genomes
defaultIsClosed 0

    track vcf
    shortLabel Phase 3 integrated variant calls
    bigDataUrl https://raw.githubusercontent.com/igvteam/igv-data/refs/heads/main/data/tutorials/vcf/ALL.apol1.sample.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf
    type vcf
    parent variants

    track sampleInfo
    shortLabel Sample Information
    bigDataUrl https://raw.githubusercontent.com/igvteam/igv-data/refs/heads/main/data/tutorials/vcf/integrated_call_samples_v3.20130502.ALL.panel
    type sampleinfo
    parent variants

    track bed
    shortLabel SNPs
    type bed
    bigDataUrl https://raw.githubusercontent.com/igvteam/igv-data/refs/heads/main/data/tutorials/vcf/apol1_snp131.bed
    parent variants